Dr. Kai Blin

Senior Researcher / Associate Professor
Technical University of Denmark
Dr. Kai Blin
kblin@dtu.dk github.com/kblin 0000-0003-3764-6051 Google Scholar
34 h-index
22342 citations
61 publications
16000+ antiSMASH citations

Research

My research centers on microbial natural products and the biosynthetic gene clusters (BGCs) that encode them. These small bioactive molecules are essential in medicine, agriculture, and materials science, and recent advances in genomics now support systematic discovery of their underlying pathways.

Since 2010, I have coordinated and co‑developed antiSMASH, the field‑standard platform for microbial genome mining. Under my leadership, the antiSMASH ecosystem has expanded to include the MIBiG data standard and database of experimentally characterized BGCs, the antiSMASH database, and complementary tools such as a CRISPR/Cas sgRNA design system.

My current work increasingly incorporates machine‑learning approaches for structure and activity prediction of natural products, integrating genomic, chemical, and bioactivity data to accelerate discovery across diverse microbial lineages.

Key Achievements

Clarivate Highly Cited Researcher, 2021–2025
Recognized for five consecutive years for global research influence in microbial natural products and genome mining.

Employment

Senior Researcher / Associate Professor, Technical University of Denmark

Department of Biotechnology and Biomedicine
01/2026 – now | Kgs. Lyngby, Denmark

My current work focuses on natural product biosynthesis, genome mining, and the development of computational tools that support microbial secondary metabolite discovery and classification.

Senior Researcher / Associate Professor, Technical University of Denmark

Novo Nordisk Foundation Center for Biosustainability
11/2021 – 12/2025 | Kgs. Lyngby, Denmark

Led research in microbial natural products, further expanded the antiSMASH ecosystem, and supervised MSc and PhD students in computational biology and biosynthesis.

Researcher / Assistant Professor, Technical University of Denmark

Novo Nordisk Foundation Center for Biosustainability
01/2018 – 10/2021 | Kgs. Lyngby, Denmark

Conducted research on genome-based discovery of natural products and contributed to the development of computational tools and databases in bacterial secondary metabolism.

Postdoctoral Fellow, Technical University of Denmark

Novo Nordisk Foundation Center for Biosustainability
01/2015 – 12/2017 | Kgs. Lyngby, Denmark

Resumed my natural products genome mining work and started working on our CRISPR/Cas9 toolkit with CRISPy-web.

Postdoctoral Fellow, Max Planck Institute for Biology of Ageing

Computational Biology
11/2013 – 12/2014 | Cologne, Germany

Worked on computational analyses of non-coding RNAs and built the DoRiNA 2.0 database.

Education

Dr. rer. nat. (PhD equivalent), University of Tübingen

Faculty of Natural Science
04/2010 – 01/2014

Doctoral research in natural product biosynthesis and computational biology where I co-created the antiSMASH software.

Diplom (M.Sc. equivalent) in Computer Science, University of Tübingen

Faculty of Computer Science
09/2003 – 12/2009

Training in computational methods foundational to later bioinformatics tool development.

Technical Skills

Data Science, Genome Mining, Machine Learning / Artificial Intelligence, Software Engineering

Scholarly Activities

Grant Reviews

Reviewer for competitive international funding programs, including panels for the German Research Foundation, the Research Council of Norway, and UK Research & Innovation.

PhD Panel Work

Member of the DTU Biosustain PhD committee. Responsibilities include evaluating project proposals, academic progress assessment, and examination work.

  • Head of PhD panels: 2
  • Chair of PhD defenses: 9

Selected Publications

5 selected publications. Dr. Blin has an h-index of 34, with 61 peer-reviewed papers cited 22342 times (Google Scholar, 2026-02-02).

  1. MIBiG 4.0: advancing biosynthetic gene cluster curation through global collaboration
    Mitja M Zdouc, Kai Blin, Nico L L Louwen, Jorge Navarro, Catarina Loureiro, Chantal D Bader, Constance B Bailey, Lena Barra, et al.
    Nucleic Acids Research, 53 (D1), D678-D690, 2025.0
  2. antiSMASH 8.0: extended gene cluster detection capabilities and analyses of chemistry, enzymology, and regulation
    Kai Blin, Simon Shaw, Lisa Vader, Judit Szenei, Zachary L Reitz, Hannah E Augustijn, José D D Cediel-Becerra, Valérie Crécy-Lagard, et al.
    Nucleic Acids Research, 53 (W1), W32-W38, 2025.0
  3. A treasure trove of 1034 actinomycete genomes
    Tue Sparholt Jørgensen, Omkar S Mohite, Eva B Sterndorff, Maria Alvarez-Arevalo, Kai Blin, Thomas J Booth, Pep Charusanti, David Faurdal, et al.
    Nucleic Acids Research, 52 (13), 7487-7503, 2024.0
  4. Artificial intelligence for natural product drug discovery
    Michael W. Mullowney, Katherine R. Duncan, Somayah S. Elsayed, Neha Garg, Justin J. J. Hooft, Nathaniel I. Martin, David Meijer, Barbara R. Terlouw, et al.
    Nature Reviews Drug Discovery, 22 (11), 895-916, 2023.0
  5. SpikeSeq: A rapid, cost efficient and simple method to identify SARS-CoV-2 variants of concern by Sanger sequencing part of the spike protein gene
    Tue Sparholt Jørgensen, Martin Schou Pedersen, Kai Blin, Franziska Kuntke, Henrik K. Salling, Rasmus L. Marvig, Thomas Y. Michaelsen, Mads Albertsen, et al.
    Journal of Virological Methods, 312, 114648, 2023.0

Teaching

Getting Started with Python for Data Science and Automation in Biotechnology (DTU 29905)

Course responsible
2016 – now

Responsible for developing and delivering course content that introduces programming, data analysis, and machine learning tools used in modern biotechnology.

Biosynthesis of Natural Products (DTU 27442, MSc course)

Course co-responsible
2020 – now

Teaching advanced bioinformatics methods for natural product genome mining.

Analytical Microbial Natural Products Chemistry and Biosynthesis (DTU 27832, PhD course)

Course co-responsible
2021 – now

Teaching advanced bioinformatics methods for natural product genome mining.

Supervision

  • MSc projects supervised: 5 (1 in progress)
  • PhD students supervised: 6 (4 as main supervisor)